GMGC-mapper
GMGC-mapper is a command line tool to query input genome to the Global Microbial Gene Catalog (GMGC). It will return the summary of alignment categories and genome bins.
Commands
-
-i/--input
: path to the input genome file(.fasta/.gz/.bz2). -
-o/--output
: Output directory (will be created if non-existent). -
-nt_input
: path to the input DNA gene file(.fasta/.gz/.bz2). -
-aa_input
: path to the input Protein gene file(.fasta/.gz/.bz2).
The input must contain a genome file or DNA and Protein gene file or just Protein gene file.